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Shang Xuequn

Professor

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20042025

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  • 2019

    Identifying Differentially Expressed Genes Based on Differentially Expressed Edges

    Chen, B., Gao, L. & Shang, X., 2019, Intelligent Computing Theories and Application - 15th International Conference, ICIC 2019, Proceedings. Huang, D.-S., Jo, K.-H. & Huang, Z.-K. (eds.). Springer Verlag, p. 105-115 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11644 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Identifying functional evolution processes according to the pathological stages of colorectal cancer

    Chen, B., Yang, M., Gao, L. & Shang, X., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 193-196 4 p. 8983256. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Integrating multi-network topology via deep semi-supervised node embedding

    Xue, H., Li, J., Peng, J. & Shang, X., 3 Nov 2019, CIKM 2019 - Proceedings of the 28th ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 2117-2120 4 p. (International Conference on Information and Knowledge Management, Proceedings).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Integrating Multiple Datasets to Discover Stage-Specific Cancer Related Genes and Stage-Specific Pathways

    Chen, B., Aouiche, C. & Shang, X., 2019, Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Proceedings. Valenzuela, O., Ortuño, F., Rojas, F., Ortuño, F. & Rojas, I. (eds.). Springer Verlag, p. 240-250 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11465 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Student knowledge diagnosis on response data via the model of sparse factor learning

    Zhang, Y., Dai, H., Yun, Y. & Shang, X., 2019, EDM 2019 - Proceedings of the 12th International Conference on Educational Data Mining. Lynch, C. F., Merceron, A., Desmarais, M. & Nkambou, R. (eds.). International Educational Data Mining Society, p. 691-694 4 p. (EDM 2019 - Proceedings of the 12th International Conference on Educational Data Mining).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Towards gene function prediction via multi-networks representation learning

    Xue, H., Peng, J. & Shang, X., 2019, 33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019. AAAI press, p. 10069-10070 2 p. (33rd AAAI Conference on Artificial Intelligence, AAAI 2019, 31st Innovative Applications of Artificial Intelligence Conference, IAAI 2019 and the 9th AAAI Symposium on Educational Advances in Artificial Intelligence, EAAI 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    6 Scopus citations

  • TSGOE: A web tool for tissue-specific gene ontology enrichment

    Peng, J., Lu, G., Xue, H., Wang, T. & Shang, X., 21 Jan 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1266-1269 4 p. 8621204. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2018

    Hierarchical similarity network fusion for discovering cancer subtypes

    Liu, S. & Shang, X., 2018, Bioinformatics Research and Applications - 14th International Symposium, ISBRA 2018, Proceedings. Zhang, F., Zhang, S., Cai, Z. & Skums, P. (eds.). Springer Verlag, p. 125-136 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10847 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Low-rank graph regularized sparse coding

    Zhang, Y., Liu, S., Shang, X. & Xiang, M., 2018, PRICAI 2018: Trends in Artificial Intelligence - 15th Pacific Rim International Conference on Artificial Intelligence, Proceedings. Kang, B.-H. & Geng, X. (eds.). Springer Verlag, p. 177-190 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11012 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • NetCoffee2: A Novel Global Alignment Algorithm for Multiple PPI Networks Based on Graph Feature Vectors

    Hu, J., He, J., Gao, Y., Zheng, Y. & Shang, X., 2018, Intelligent Computing Theories and Application - 14th International Conference, ICIC 2018, Proceedings. Jo, K.-H., Huang, D.-S. & Zhang, X.-L. (eds.). Springer Verlag, p. 241-246 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10955 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2017

    Analyzing factors involved in the HPO-based semantic similarity calculation

    Peng, J., Li, Q., Chen, B., Hu, J. & Shang, X., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Burrage, K., Zhu, Q., Liu, Y., Tian, T., Wang, Y., Hu, X. T., Jiang, Q., Song, J., Morishita, S., Burrage, K. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1653-1656 4 p. 7822766. (Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • LCM-DS: A novel approach of predicting drug-drug interactions for new drugs via Dempster-Shafer theory of evidence

    Shi, J. Y., Gao, K., Shang, X. Q. & Yiu, S. M., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Burrage, K., Zhu, Q., Liu, Y., Tian, T., Wang, Y., Hu, X. T., Jiang, Q., Song, J., Morishita, S., Burrage, K. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 512-515 4 p. 7822571. (Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    21 Scopus citations

  • Measuring phenotype-phenotype similarity through the interactome

    Peng, J., Hui, W. & Shang, X., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1674-1677 4 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Measuring phenotype semantic similarity using Human Phenotype Ontology

    Peng, J., Xue, H., Shao, Y., Shang, X., Wang, Y. & Chen, J., 17 Jan 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Burrage, K., Zhu, Q., Liu, Y., Tian, T., Wang, Y., Hu, X. T., Jiang, Q., Song, J., Morishita, S., Burrage, K. & Wang, G. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 763-766 4 p. 7822617. (Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • MiteFinder: A fast approach to identify miniature inverted-repeat transposable elements on a genome-wide scale

    Hu, J., Zheng, Y. & Shang, X., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 164-168 5 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Net2Image: A network representation method for identifying cancer-related genes

    Chen, B., Jin, Y. & Shang, X., 2017, Bioinformatics Research and Applications - 13th International Symposium, ISBRA 2017, Proceedings. Cai, Z., Daescu, O. & Li, M. (eds.). Springer Verlag, p. 337-343 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10330 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Towards the classification of cancer subtypes by using cascade deep forest model in gene expression data

    Guo, Y., Liu, S., Li, Z. & Shang, X., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C.-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1664-1669 6 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    33 Scopus citations
  • 2015

    A two-step logistic regression algorithm for identifying individual-cancer-related genes

    Chen, B., Shang, X., Li, M., Wang, J. & Wu, F. X., 16 Dec 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 195-200 6 p. 7359680. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    10 Scopus citations
  • 2014

    Identification of protein complexes and functional modules in integrated PPI networks

    Guo, Y., Shang, X., Zhu, Q., Huang, M. & Li, Z., 29 Dec 2014, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Zheng, H., Hu, X. T., Wang, Y., Hao, J.-K., Gilbert, D., Berrar, D., Cho, K.-H. & Dubitzky, W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 8-15 8 p. 6999291. (Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2013

    Revealing the causes of dynamic change in protein-protein interaction network

    Guo, Y., Shang, X., Li, J. & Li, Z., 2013, Proceedings - 2013 IEEE International Congress on Big Data, BigData 2013. p. 189-194 6 p. 6597136. (Proceedings - 2013 IEEE International Congress on Big Data, BigData 2013).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 2012

    Mining functional modules in uncertain protein-protein interaction network

    Meng, Y., Shang, X., Miao, M. & Wang, M., 2012, Advances in Science and Engineering II. p. 602-608 7 p. (Applied Mechanics and Materials; vol. 135-136).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mining maximal dense subgraphs in uncertain PPI network

    Liu, J., Shang, X., Meng, Y. & Wang, M., 2012, Advances in Science and Engineering II. p. 609-615 7 p. (Applied Mechanics and Materials; vol. 135-136).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • MRCluster: Mining constant row bicluster in gene expression data

    Miao, M., Shang, X., Liu, J. & Wang, M., 2012, Advances in Science and Engineering II. p. 628-633 6 p. (Applied Mechanics and Materials; vol. 135-136).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2011

    FTCluster: Efficient mining fault-tolerant biclusters in microarray dataset

    Wang, M., Shang, X., Miao, M., Li, Z. & Liu, W., 2011, Proceedings - 11th IEEE International Conference on Data Mining Workshops, ICDMW 2011. p. 1075-1082 8 p. 6137500. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • MFCluster: Mining maximal fault-tolerant constant row biclusters in microarray dataset

    Wang, M., Shang, X., Miao, M., Li, Z. & Liu, W., 2011, Web-Age Information Management - 12th International Conference,WAIM 2011, Proceedings. p. 181-190 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6897 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • MSPattern: Efficient mining maximal subspace differential co-expression patterns in microarray datasets

    Wang, M., Shang, X., Miao, M., Li, Z. & Liu, W., 2011, 2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011. 6061805. (2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2010

    A new measure based on gene ontology for semantic similarity of genes

    Zhang, S., Shang, X., Wang, M. & Diao, J., 2010, Proceedings - 2010 WASE International Conference on Information Engineering, ICIE 2010. p. 85-88 4 p. 5571719. (Proceedings - 2010 WASE International Conference on Information Engineering, ICIE 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • FDCluster: Mining frequent closed discriminative bicluster without candidate maintenance in multiple microarray datasets

    Wang, M., Shang, X., Zhang, S. & Li, Z., 2010, Proceedings - 10th IEEE International Conference on Data Mining Workshops, ICDMW 2010. Institute of Electrical and Electronics Engineers Inc., p. 779-786 8 p. 5693375. (Proceedings - IEEE International Conference on Data Mining, ICDM).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    18 Scopus citations

  • Mining frequent correlated-Quasi-Cliques from PPI networks

    Lei, X., Shang, X., Wang, M. & Diao, J., 2010, Proceedings - 2010 WASE International Conference on Information Engineering, ICIE 2010. p. 7-10 4 p. 5571199. (Proceedings - 2010 WASE International Conference on Information Engineering, ICIE 2010; vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Mining maximal frequent dense subgraphs without candidate maintenance in PPI networks

    Wang, M., Shang, X., Lei, X. & Li, Z., 2010, Proceedings - 2010 2nd International Workshop on Intelligent Systems and Applications, ISA 2010. 5473237. (Proceedings - 2010 2nd International Workshop on Intelligent Systems and Applications, ISA 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Using direct and indirect neighbours to predict protein function in GO-evaluated PPI data set

    Wang, M., Shang, X., Zhang, S. & Li, Z., 2010, Proceedings - 2010 2nd International Workshop on Intelligent Systems and Applications, ISA 2010. 5473349. (Proceedings - 2010 2nd International Workshop on Intelligent Systems and Applications, ISA 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 2009

    Mining functional associated patterns from biological network data

    Shang, X., Li, Z. & Li, W., 2009, 24th Annual ACM Symposium on Applied Computing, SAC 2009. p. 1488-1489 2 p. (Proceedings of the ACM Symposium on Applied Computing).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Mining high-correlation association rules for inferring gene regulation networks

    Shang, X., Zhao, Q. & Li, Z., 2009, Data Warehousing and Knowledge Discovery - 11th International Conference, DaWaK 2009, Proceedings. p. 244-255 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5691 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Strong association rules mining without using frequent items for microarray analysis

    Wang, M., Shang, X., Zhao, Q. & Li, Z., 2009, 3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009. 5163431. (3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2008

    Sequential pattern mining for protein function prediction

    Wang, M., Shang, X. Q. & Li, Z. H., 2008, Advanced Data Mining and Applications - 4th International Conference, ADMA 2008, Proceedings. Springer Verlag, p. 652-658 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5139 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    16 Scopus citations
  • 2005

    Frequent itemset mining with parallel RDBMS

    Shang, X. & Sattler, K. U., 2005, Advances in Knowledge Discovery and Data Mining - 9th Pacific-Asia Conference, PAKDD 2005, Proceedings. Springer Verlag, p. 539-544 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3518 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • SQL based frequent pattern mining with FP-growth

    Shang, X., Sattler, K. U. & Geist, I., 2005, Applic. of Declarative Program. and Knowledge Manage. - 15th Int. Conf. on Applications of Declarative Program. and Knowledge Manage., INAP 2004, and 18th Workshop on Logic Program., WLP 2004. Springer Verlag, p. 32-46 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3392 LNAI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations