GGANet: A Model for the Prediction of MiRNA-Drug Resistance Based on Contrastive Learning and Global Attention

Zimai Zhang, Bo Wei Zhao, Yu An Huang, Zhu Hong You, Lun Hu, Xi Zhou, Pengwei Hu

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

MicroRNAs (miRNAs) play crucial roles in organisms, and recent studies confirm their link to various diseases. The regulatory mechanisms and influence of miRNAs are current research hotspots. Biological experiments require significant time and resources, so we propose a novel model based on the global attention network graph (GGANet), considering multiple features of miRNAs and drugs. It uses clustering contrast learning to enhance information aggregation. (1) We fused multiple features for miRNAs and drugs during initialization to better represent node information. (2) Clustering comparison learning helps nodes learn differences and similarities in hidden features. (3) A global transformer module was used, which can pay attention to local node information while also utilizing the global graph attention mechanism. The model achieved an AUC of 0.9779, AUPR of 0.9771, and F1-score of 0.9615, demonstrating excellent link prediction performance and robustness.

Original languageEnglish
Title of host publicationAdvanced Intelligent Computing in Bioinformatics - 20th International Conference, ICIC 2024, Proceedings
EditorsDe-Shuang Huang, Qinhu Zhang, Jiayang Guo
PublisherSpringer Science and Business Media Deutschland GmbH
Pages263-275
Number of pages13
ISBN (Print)9789819756889
DOIs
StatePublished - 2024
Event20th International Conference on Intelligent Computing , ICIC 2024 - Tianjin, China
Duration: 5 Aug 20248 Aug 2024

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume14881 LNBI
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference20th International Conference on Intelligent Computing , ICIC 2024
Country/TerritoryChina
CityTianjin
Period5/08/248/08/24

Keywords

  • Feature Contrast Learning
  • Global-graph Attention
  • MiRNA-drug Resistance

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