SPRDA: a link prediction approach based on the structural perturbation to infer disease-associated Piwi-interacting RNAs

Kai Zheng, Xin Lu Zhang, Lei Wang, Zhu Hong You, Bo Ya Ji, Xiao Liang, Zheng Wei Li

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33 引用 (Scopus)

摘要

piRNA and PIWI proteins have been confirmed for disease diagnosis and treatment as novel biomarkers due to its abnormal expression in various cancers. However, the current research is not strong enough to further clarify the functions of piRNA in cancer and its underlying mechanism. Therefore, how to provide large-scale and serious piRNA candidates for biological research has grown up to be a pressing issue. In this study, a novel computational model based on the structural perturbation method is proposed to predict potential disease-associated piRNAs, called SPRDA. Notably, SPRDA belongs to positive-unlabeled learning, which is unaffected by negative examples in contrast to previous approaches. In the 5-fold cross-validation, SPRDA shows high performance on the benchmark dataset piRDisease, with an AUC of 0.9529. Furthermore, the predictive performance of SPRDA for 10 diseases shows the robustness of the proposed method. Overall, the proposed approach can provide unique insights into the pathogenesis of the disease and will advance the field of oncology diagnosis and treatment.

源语言英语
文章编号bbac498
期刊Briefings in Bioinformatics
24
1
DOI
出版状态已出版 - 1 1月 2023
已对外发布

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