TY - JOUR
T1 - Inverse Projection Representation and Category Contribution Rate for Robust Tumor Recognition
AU - Yang, Xiaohui
AU - Tian, Li
AU - Chen, Yunmei
AU - Yang, Lijun
AU - Xu, Shuang
AU - Wu, Wenming
N1 - Publisher Copyright:
© 2004-2012 IEEE.
PY - 2020/7/1
Y1 - 2020/7/1
N2 - Sparse representation based classification (SRC) methods have achieved remarkable results. SRC, however, still suffer from requiring enough training samples, insufficient use of test samples, and instability of representation. In this paper, a stable inverse projection representation based classification (IPRC) is presented to tackle these problems by effectively using test samples. An IPR is first proposed and its feasibility and stability are analyzed. A classification criterion named category contribution rate is constructed to match the IPR and complete classification. Moreover, a statistical measure is introduced to quantify the stability of representation-based classification methods. Based on the IPRC technique, a robust tumor recognition framework is presented by interpreting microarray gene expression data, where a two-stage hybrid gene selection method is introduced to select informative genes. Finally, the functional analysis of candidate's pathogenicity-related genes is given. Extensive experiments on six public tumor microarray gene expression datasets demonstrate the proposed technique is competitive with state-of-the-art methods.
AB - Sparse representation based classification (SRC) methods have achieved remarkable results. SRC, however, still suffer from requiring enough training samples, insufficient use of test samples, and instability of representation. In this paper, a stable inverse projection representation based classification (IPRC) is presented to tackle these problems by effectively using test samples. An IPR is first proposed and its feasibility and stability are analyzed. A classification criterion named category contribution rate is constructed to match the IPR and complete classification. Moreover, a statistical measure is introduced to quantify the stability of representation-based classification methods. Based on the IPRC technique, a robust tumor recognition framework is presented by interpreting microarray gene expression data, where a two-stage hybrid gene selection method is introduced to select informative genes. Finally, the functional analysis of candidate's pathogenicity-related genes is given. Extensive experiments on six public tumor microarray gene expression datasets demonstrate the proposed technique is competitive with state-of-the-art methods.
KW - Tumor classification, inverse projection representation, category contribution rate, classification stability index
KW - two-stage hybrid gene selection
UR - http://www.scopus.com/inward/record.url?scp=85058875313&partnerID=8YFLogxK
U2 - 10.1109/TCBB.2018.2886334
DO - 10.1109/TCBB.2018.2886334
M3 - 文章
C2 - 30575544
AN - SCOPUS:85058875313
SN - 1545-5963
VL - 17
SP - 1262
EP - 1275
JO - IEEE/ACM Transactions on Computational Biology and Bioinformatics
JF - IEEE/ACM Transactions on Computational Biology and Bioinformatics
IS - 4
M1 - 8580408
ER -