Zebrafish cell/neuron quantitation by modified circular hough transform

Tianming Liu; Jianfeng Lu; Jingxin Nie; Gang Li; Hui Yan; Jingyu Yang; Lei Guo; Weiming Xia; Stephen T.C. Wong

doi:10.1109/LSSA.2006.250413

Zebrafish cell/neuron quantitation by modified circular hough transform

Tianming Liu
, Jianfeng Lu
, Jingxin Nie
, Gang Li
, Hui Yan
, Jingyu Yang
, Lei Guo
, Weiming Xia
, Stephen T.C. Wong

自动化学院

Harvard University
Nanjing University of Science and Technology
Northwestern Polytechnical University Xian
Massachusetts General Hospital

科研成果: 书/报告/会议事项章节 › 会议稿件 › 同行评审

1 引用（Scopus）

摘要

Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.

源语言	英语
主期刊名	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
DOI	https://doi.org/10.1109/LSSA.2006.250413
出版状态	已出版 - 2006
活动	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 - Bethesda, MD, 美国期限: 13 7月 2006 → 14 7月 2006

出版系列

姓名	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

会议

会议	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
国家/地区	美国
市	Bethesda, MD
时期	13/07/06 → 14/07/06

联合国可持续发展目标

此成果有助于实现下列可持续发展目标：

可持续发展目标 3 良好健康与福祉

访问文件

10.1109/LSSA.2006.250413

其它文件与链接

链接到 Scopus 的出版物

引用此

Liu, T., Lu, J., Nie, J., Li, G., Yan, H., Yang, J., Guo, L., Xia, W., & Wong, S. T. C. (2006). Zebrafish cell/neuron quantitation by modified circular hough transform. 在 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 文章 4015814 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006). https://doi.org/10.1109/LSSA.2006.250413

@inproceedings{b8a4f9038cb84330b7486c3c7e7a6781,

title = "Zebrafish cell/neuron quantitation by modified circular hough transform",

abstract = "Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.",

author = "Tianming Liu and Jianfeng Lu and Jingxin Nie and Gang Li and Hui Yan and Jingyu Yang and Lei Guo and Weiming Xia and Wong, \{Stephen T.C.\}",

year = "2006",

doi = "10.1109/LSSA.2006.250413",

language = "英语",

isbn = "1424402786",

series = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

booktitle = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

note = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 ; Conference date: 13-07-2006 Through 14-07-2006",

}

Liu, T, Lu, J, Nie, J, Li, G, Yan, H, Yang, J, Guo, L, Xia, W & Wong, STC 2006, Zebrafish cell/neuron quantitation by modified circular hough transform. 在 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006., 4015814, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, Bethesda, MD, 美国, 13/07/06. https://doi.org/10.1109/LSSA.2006.250413

TY - GEN

T1 - Zebrafish cell/neuron quantitation by modified circular hough transform

AU - Liu, Tianming

AU - Lu, Jianfeng

AU - Nie, Jingxin

AU - Li, Gang

AU - Yan, Hui

AU - Yang, Jingyu

AU - Guo, Lei

AU - Xia, Weiming

AU - Wong, Stephen T.C.

PY - 2006

Y1 - 2006

N2 - Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.

AB - Microscopic imaging has become a critical step in the analysis of zebrafish phenotype, but tremendous amount of images generated from large number of embryos have become a bottleneck of data interpretation. The availability of an image informatics pipeline will be a significant step towards achieving reproducible quantitation of zebrafish phenotypes in scientific research and high-throughput screening. This paper presents an automated algorithm based on modified circular Hough transform for quantitation of zebrafish cells and neurons in microscopy imaging. Experimental results of three datasets are shown to demonstrate the performance of the algorithm. This algorithm has been integrated into our CBI Platform.

UR - https://www.scopus.com/pages/publications/37649032231

U2 - 10.1109/LSSA.2006.250413

DO - 10.1109/LSSA.2006.250413

M3 - 会议稿件

AN - SCOPUS:37649032231

SN - 1424402786

SN - 9781424402786

T3 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

BT - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

T2 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Y2 - 13 July 2006 through 14 July 2006

ER -

Zebrafish cell/neuron quantitation by modified circular hough transform

摘要

出版系列

会议

联合国可持续发展目标

访问文件

其它文件与链接

学术指纹

引用此