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Signal sampling for efficient sparse representation of resting state FMRI data

  • Bao Ge
  • , Jin Wang
  • , Jinglei Lv
  • , Shu Zhang
  • , Shijie Zhao
  • , Wei Zhang
  • , Qinghua Zhao
  • , Xiang Li
  • , Xi Jiang
  • , Junwei Han
  • , Lei Guo
  • , Tianming Liu
  • Shaanxi Normal University
  • University of Georgia
  • Northwestern Polytechnical University Xian
  • Nanjing University of Science and Technology

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

1 Scopus citations

Abstract

As brain imaging data such as fMRI is growing explosively, how to reduce its size but not to lose much information becomes a pressing problem. To address this problem, this work aims to represent resting state fMRI (rs-fMRI) signals of a whole brain via a statistical sampling based sparse representation. Specifically, we improve the online dictionary learning and sparse coding algorithm by adding a sampling step before the whole-brain sparse representation. Our comparison experiments demonstrated that this sampling-enabled sparse representation method can speedup by ten times without losing much information. In particular, our results showed that anatomical landmark-guided sampling is substantially better than statistical random sampling in reconstructing concurrent functional brain networks from the Human Connectome Project (HCP) rs-fMRI data.

Original languageEnglish
Title of host publication2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015
PublisherIEEE Computer Society
Pages1360-1363
Number of pages4
ISBN (Electronic)9781479923748
DOIs
StatePublished - 21 Jul 2015
Event12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 - Brooklyn, United States
Duration: 16 Apr 201519 Apr 2015

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2015-July
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference12th IEEE International Symposium on Biomedical Imaging, ISBI 2015
Country/TerritoryUnited States
CityBrooklyn
Period16/04/1519/04/15

Keywords

  • DICCCOL
  • DTI
  • resting state fMRI
  • resting state networks
  • sampling

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