FGF: A web tool for Fishing Gene Family in a whole genome database

Hongkun Zheng; Junjie Shi; Xiaodong Fang; Yuan Li; Søren Vang; Wei Fan; Junyi Wang; Zhang Zhang; Wen Wang; Karsten Kristiansen; Jun Wang

doi:10.1093/nar/gkm426

FGF: A web tool for Fishing Gene Family in a whole genome database

Hongkun Zheng, Junjie Shi, Xiaodong Fang, Yuan Li, Søren Vang, Wei Fan, Junyi Wang, Zhang Zhang, Wen Wang, Karsten Kristiansen, Jun Wang

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program to efficiently search for and identify gene families. The FGF output displays the results as visual phylogenetic trees including information on gene structure, chromosome position, duplication fate and selective pressure. It is particularly useful to identify pseudogenes and detect changes in gene structure. FGF is freely available on a web server at http://fgf.genomics.org.cn/.

Original language	English
Pages (from-to)	W121-W125
Journal	Nucleic Acids Research
Volume	35
Issue number	SUPPL.2
DOIs	https://doi.org/10.1093/nar/gkm426
State	Published - Jul 2007
Externally published	Yes

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abstract = "Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program to efficiently search for and identify gene families. The FGF output displays the results as visual phylogenetic trees including information on gene structure, chromosome position, duplication fate and selective pressure. It is particularly useful to identify pseudogenes and detect changes in gene structure. FGF is freely available on a web server at http://fgf.genomics.org.cn/.",

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T2 - A web tool for Fishing Gene Family in a whole genome database

AU - Zheng, Hongkun

AU - Shi, Junjie

AU - Fang, Xiaodong

AU - Li, Yuan

AU - Vang, Søren

AU - Fan, Wei

AU - Wang, Junyi

AU - Zhang, Zhang

AU - Wang, Wen

AU - Kristiansen, Karsten

AU - Wang, Jun

PY - 2007/7

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AB - Gene duplication is an important process in evolution. The availability of genome sequences of a number of organisms has made it possible to conduct comprehensive searches for duplicated genes enabling informative studies of their evolution. We have established the FGF (Fishing Gene Family) program to efficiently search for and identify gene families. The FGF output displays the results as visual phylogenetic trees including information on gene structure, chromosome position, duplication fate and selective pressure. It is particularly useful to identify pseudogenes and detect changes in gene structure. FGF is freely available on a web server at http://fgf.genomics.org.cn/.

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SP - W121-W125

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JF - Nucleic Acids Research

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ER -

FGF: A web tool for Fishing Gene Family in a whole genome database

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