Automated quantitation of zebrafish somites in high-throughput screens

Jianfeng Lu; Tianming Liu; Jingxín Nie; Jie Ding; Jinmin Zhu; Jingyu Yang; Lei Guo; Weiming Xia; Stephen T.C. Wong

doi:10.1109/LSSA.2006.250389

Automated quantitation of zebrafish somites in high-throughput screens

Jianfeng Lu
, Tianming Liu
, Jingxín Nie
, Jie Ding
, Jinmin Zhu
, Jingyu Yang
, Lei Guo
, Weiming Xia
, Stephen T.C. Wong

School of Automation

Nanjing University of Science and Technology
Harvard University
Brigham and Women’s Hospital
Northwestern Polytechnical University Xian
Center for Neurologic Diseases

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Abstract

With the availability of high-throughput imaging machines and large number of zebrafish embryos, zebrafish is by far one of the most cost-effective vertebrate systems for high-throughput or high-content screens. With the tremendous amount of images generated from large numbers of zebrafish, computerized image analysis for accurate and efficient data interpretation becomes essential. This paper presents an automated algorithm for quantitation of zebrafish somite in high-throughput screen. Preliminary evaluation results are shown to demonstrate the performance of the algorithm, This algorithm has been integrated into our CBI Platform.

Original language	English
Title of host publication	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
DOIs	https://doi.org/10.1109/LSSA.2006.250389
State	Published - 2006
Event	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 - Bethesda, MD, United States Duration: 13 Jul 2006 → 14 Jul 2006

Publication series

Name	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Conference

Conference	2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006
Country/Territory	United States
City	Bethesda, MD
Period	13/07/06 → 14/07/06

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

Access to Document

10.1109/LSSA.2006.250389

Cite this

Lu, J., Liu, T., Nie, J., Ding, J., Zhu, J., Yang, J., Guo, L., Xia, W., & Wong, S. T. C. (2006). Automated quantitation of zebrafish somites in high-throughput screens. In 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 Article 4015790 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006). https://doi.org/10.1109/LSSA.2006.250389

@inproceedings{67a5a10b3728488e873476cfb51edcc1,

title = "Automated quantitation of zebrafish somites in high-throughput screens",

abstract = "With the availability of high-throughput imaging machines and large number of zebrafish embryos, zebrafish is by far one of the most cost-effective vertebrate systems for high-throughput or high-content screens. With the tremendous amount of images generated from large numbers of zebrafish, computerized image analysis for accurate and efficient data interpretation becomes essential. This paper presents an automated algorithm for quantitation of zebrafish somite in high-throughput screen. Preliminary evaluation results are shown to demonstrate the performance of the algorithm, This algorithm has been integrated into our CBI Platform.",

author = "Jianfeng Lu and Tianming Liu and Jingx{\'i}n Nie and Jie Ding and Jinmin Zhu and Jingyu Yang and Lei Guo and Weiming Xia and Wong, \{Stephen T.C.\}",

year = "2006",

doi = "10.1109/LSSA.2006.250389",

language = "英语",

isbn = "1424402786",

series = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

booktitle = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006",

note = "2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006 ; Conference date: 13-07-2006 Through 14-07-2006",

}

Lu, J, Liu, T, Nie, J, Ding, J, Zhu, J, Yang, J, Guo, L, Xia, W & Wong, STC 2006, Automated quantitation of zebrafish somites in high-throughput screens. in 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006., 4015790, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006, Bethesda, MD, United States, 13/07/06. https://doi.org/10.1109/LSSA.2006.250389

Automated quantitation of zebrafish somites in high-throughput screens. / Lu, Jianfeng; Liu, Tianming; Nie, Jingxín et al.
2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 2006. 4015790 (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Automated quantitation of zebrafish somites in high-throughput screens

AU - Lu, Jianfeng

AU - Liu, Tianming

AU - Nie, Jingxín

AU - Ding, Jie

AU - Zhu, Jinmin

AU - Yang, Jingyu

AU - Guo, Lei

AU - Xia, Weiming

AU - Wong, Stephen T.C.

PY - 2006

Y1 - 2006

N2 - With the availability of high-throughput imaging machines and large number of zebrafish embryos, zebrafish is by far one of the most cost-effective vertebrate systems for high-throughput or high-content screens. With the tremendous amount of images generated from large numbers of zebrafish, computerized image analysis for accurate and efficient data interpretation becomes essential. This paper presents an automated algorithm for quantitation of zebrafish somite in high-throughput screen. Preliminary evaluation results are shown to demonstrate the performance of the algorithm, This algorithm has been integrated into our CBI Platform.

AB - With the availability of high-throughput imaging machines and large number of zebrafish embryos, zebrafish is by far one of the most cost-effective vertebrate systems for high-throughput or high-content screens. With the tremendous amount of images generated from large numbers of zebrafish, computerized image analysis for accurate and efficient data interpretation becomes essential. This paper presents an automated algorithm for quantitation of zebrafish somite in high-throughput screen. Preliminary evaluation results are shown to demonstrate the performance of the algorithm, This algorithm has been integrated into our CBI Platform.

UR - https://www.scopus.com/pages/publications/42749106934

U2 - 10.1109/LSSA.2006.250389

DO - 10.1109/LSSA.2006.250389

M3 - 会议稿件

AN - SCOPUS:42749106934

SN - 1424402786

SN - 9781424402786

T3 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

BT - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

T2 - 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006

Y2 - 13 July 2006 through 14 July 2006

ER -

Automated quantitation of zebrafish somites in high-throughput screens

Abstract

Publication series

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UN SDGs

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