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Age is important for the early-stage detection of breast cancer on both transcriptomic and methylomic biomarkers

  • Xin Feng
  • , Jialiang Li
  • , Han Li
  • , Hang Chen
  • , Fei Li
  • , Quewang Liu
  • , Zhu Hong You
  • , Fengfeng Zhou
  • College of Computer Science and Technology
  • Jilin University
  • College of Software
  • Xinjiang Technical Institute of Physics and Chemistry

Research output: Contribution to journalArticlepeer-review

11 Scopus citations

Abstract

Patients at different ages have different rates of cell development and metabolisms. As a result, age should be an essential part of how a disease diagnosis model is trained and optimized. Unfortunately, most of the existing studies have not taken age into account. This study demonstrated that disease diagnosis models could be improved by merely applying individual models for patients of different age groups. Both transcriptomes and methylomes of the TCGA breast cancer dataset (TCGA-BRCA) were utilized for the analysis procedure of feature selection and classification. Our experimental data strongly suggested that disease diagnosis modeling should integrate patient age into the whole experimental design.

Original languageEnglish
Article number212
JournalFrontiers in Genetics
Volume10
Issue numberMAR
DOIs
StatePublished - 2019
Externally publishedYes

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Age
  • BRCA
  • Classification
  • Feature selection
  • Methylome
  • Transcriptome
  • TriVote

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